With Atlantis safe from the Wraith, John, Rodney, Carson, and Elizabeth return to Earth where a new commander is waiting and someone is targeting SGC scientists.
- Part 1 of Team Rebuilding
Free of the Wraith, Ronon must decide if he is going to stay in Atlantis or leave to seek vengeance alone. While still trying to make up his mind, he and Rodney are trapped in one of the city's towers, and each starts to learn more about the other as they wait for someone to find them.
- Part 2 of Team Rebuilding